Selected Talks

  • R. Zhou, Nanoscale Dewetting Transition in Protein Complex Folding, Department of Physics, Fudan University, Shanghai, China, October 24, 2008

  • R. Zhou, Dewetting Transition and Hydrophobic Interaction in Physical and Biological Systems, International Workshop on Water at Biological Interface, Hangzhou, China, October 26-28, 2008

  • R. Zhou, H3N2 Virus protein hemagglutinin binding with antibody: Free energy perturbation calculations, 236th ACS National Meeting, Philadelphia, PA, August 18, 2008

  • R. Zhou, Protein-urea interaction: Molecular picture of chemical denaturing from large scale simulations, 236th ACS National Meeting, Philadelphia, PA, August 19, 2008

  • R. Zhou, Project Checkmate – Molecular Modeling of Avian Flu, Wadsworth Research Center, New York State Department of Public Health, Albany, May 15, 2008

  • R. Zhou, Replica Exchange Solute Tempering Method, Symposium on Replica Exchange Method and Applications, 2008 ACS National Meeting, New Orleans, April 6-10, 2008

  • R. Zhou, Exploring Hydrophobic Interactions in Protein Folding, 21st Annual Workshop on Recent Developments in Computer Simulational Studies, Department of Physics, University of Georgia - Athens, Athens, Feb 19, 2008

  • R. Zhou, Exploring Hydrophobic Interactions in Protein Folding, Department of Molecular Pharmacology, Physiology and Biotechnology (MPPB), Brown University, Rohde Island, Jan 25, 2008

  • Ruhong Zhou, Nanoscale Dewetting and Nanopore Design, International Conference on Water, Shanghai, China, December 14-18, 2007

  • Ruhong Zhou, Protein Folding with Molecular Dynamics, Department of Physics, Arizona State University, Tempe, Arizona, October 24, 2007

  • Ruhong Zhou, Destruction of Long-range Interactions in Protein Lysozyme due to a Single Mutation, 234th ACS National Meeting, Boston, August 19-23, 2007

  • Ruhong Zhou, The Checkmate Project, 2007 Annual Industrial Solutions Meeting, IBM Thomas J Watson Research Center, Hawthorne, June 28, 2007

  • Ruhong Zhou, Protein Folding Free Energy Landscape with Replica Exchange Method, 6th International Conference on Monte Carlo Methods (MCM2007), University of Reading, Reading, UK, June 20-21, 2007

  • Ruhong Zhou, Protein Folding with Molecular Dynamics, Biological Physics and Biophysical Chemistry Seminar, Department of Chemistry, SUNY-Stony Brooks, Stony Brooks, April 30, 2007

  • Ruhong Zhou, Destruction of stability and long-range interactions by a single mutation in lysozyme, 7th International Conference on Protein Stabilization (Prostab2007), University of Exeter, Exeter, UK, April 11, 2007

  • Ruhong Zhou, Destruction of Long-range Interactions in Protein Lysozyme due to a Single Mutation, Conference on Quantitative Computational Biophysics, School of Computational Science, Florida State University, Tallahassee, Feb 19, 2007

  • Ruhong Zhou, Nanoscale Dewetting in Protein Complexes, School of Computational Science, Florida State University, Tallahassee, Oct. 25, 2006

  • Ruhong Zhou, Molecular Dynamics Simulations on the Single Mutation Caused Hen Egg White Lysozyme Misfolding, Rice University, Houston, Oct. 23, 2006

  • Ruhong Zhou, Hydrophobicity in Nanoscale Dewetting and Protein Misfolding, Symposium on Hydrophobicity, SWRM06, Houston, Oct. 20, 2006

  • Ruhong Zhou, BlueGene: Single Mutation Effect on Protein Lysozyme Misfolding, Nuemann Institute of Computing (NIC), Julich, Germany, June 9, 2006

  • Ruhong Zhou, Some Initial Molecular Modeling of H5N1 Influenza Virus Protein Hemagglutinin Binding, Scripps Research Institute, Palm Beach, FL, April 28-29, 2006

  • Ruhong Zhou, Dewetting Transition in Fluorinated Superhydrophobic Plates, 231th ACS National Meeting, Atlanta, GA, March 29, 2006

  • Ruhong Zhou, Nanoscale Dewetting Transition in Physical and Biological Systems, 2006 American Physical Society (APS) March Meeting, Baltimore, MD, March 13, 2006

  • Ruhong Zhou and Ajay Royyuru, Single Mutation Effect on Protein Lysozyme Misfolding with BlueGene/L, Scripps Workshop on the Frontier of Biological/Medical Science, Palm Springs, CA, Feb. 14, 2006

  • Ruhong Zhou, Dewetting Transition in Nanoscale Hydrophobic Plate Collapse and Protein Complex Folding, Physical Science Seminars, IBM Watson Research Center, September16, 2005

  • Ruhong Zhou, Dewetting Transition in Melittin Tetramer Folding, 230th ACS National Meeting, Washington DC, August 30, 2005

  • Ruhong Zhou, Dewetting Transition and Hydrohobic Collapse in Protein Aggregates, College of Biological Science, Nanjing University, Nanjing, July 14, 2005

  • Ruhong Zhou, Protein Folding with Molecular Dynamics, College of Agricultural Science and Biotechnology, Zhejiang University, Hangzhou, July 7, 2005

  • Ruhong Zhou, Dewetting Transition in Nanoscale Hydrohobic Plate Collapse and Protein Aggregates, invited talk, Beijing International Conference on Protein Folding, Dynamics and Function, Beijing University, Beijing, July 3, 2005

  • Kush, L. Parida and Ruhong Zhou, Pattern Discovery Analysis of Protein Folding Trajectories, DIMACS Workshop on Pattern Discovery, Rutgers University, New Jersey, June 18, 2005

  • Ruhong Zhou, Screening and Refinement of Protein Structures, RECOMB2005, MIT, Boston, May 11, 2005

  • Ruhong Zhou, Dewetting Transition and Hydrohobic Collapse in Protein Aggregates, invited talk, 3rd US-Japan Conference on Protein Folding & Design, University of Pennsylvania, Philadelphia, May 4, 2005

  • Ruhong Zhou, Gelonia Dent, David Silverman, Rosalia Tungaraza, Ajay Royyuru, Protein Structure Screening and Refinement, CASP6 Conference on Protein Structure Prediction, Gaeta, Italy, December 4-8, 2004

  • Ruhong Zhou, Dewetting and Hydrophobic Collapse in Multi-domain Protein Folding, 5th International Conference on Biological Physics (ICBP2004), Gothenburg, Sweden, Aug 27, 2004

  • Ruhong Zhou, Dewetting in Nanoscale Hydrophobic Plates Collapse and Multi-domain Protein Folding, 4th Worldwide Chinese Physicists Conference, Shanghai Jiaotong University, Shanghai, June 30, 2004

  • Ruhong Zhou, Exploring Protein Folding Free Energy Landscape with Large Scale Simulation, College of Biology, Nanyang Technology University, Singapore, June 23, 2004

  • Ruhong Zhou, Protein Folding with Molecular Dynamics, College of Computing, National University of Singapore, Singapore, June 22, 2004

  • Ruhong Zhou, Exploring Free Energy Landscape of Protein Folding with Molecular Dynamics, Department of Chemistry, University of Pennsylvania, Philadelphia, May 21, 2004

  • Ruhong Zhou, Protein Folding with Large Scale Molecular Dynamics, Department of Chemistry, Kobe University, Kobe, Japan, April 20. 2004

  • Ruhong Zhou, Exploring Free Energy Landscape of Protein Folding with Molecular Dynamics, National Institute of Natural Science, Institute of Molecular Science, Okazaki, Japan, April 19, 2004

  • Ruhong Zhou, Protein Structure Prediciton: Hydrophobic Sceening and Refinement, IBM Tokyo BlueGene Workshop, Tokyo, Japan, April 15, 2004

  • Ruhong Zhou, Dewetting and Hydrophobic Collapse in Multi-domain Protein Folding, PRICPS 2004, April 14-17, Yokohama, Japan, April 14-17, 2004

  • Ruhong Zhou, Free Energy Landscape of Protein Folding in Water: Explicit vs. Implicit Solvent, 227th American Chemical Society National Meeting, Anaheim, CA, April 1, 2004

  • Ruhong Zhou, Dewetting in Nanoscale Hydrophobic Plate Collapse and Multi-domain Protein Folding, 227th American Chemical Society National Meeting, Anaheim, CA, Mar. 28, 2004

  • R. Zhou, A. Royyuru, P. Athma, and B. D. Silverman, Hydrophobicity of Multi-domain Proteins: Spatially Profiling their Distribution, RECOMB2004 , San Diego, Mar. 27, 2004

  • Ruhong Zhou, Protein Folding and Conformational Dynamics: Comparison to NMR, invited talk, Gordon Conference on Computaional Aspects - Biomolecular NMR, Ventura, CA, Jan. 19, 2004

  • Ruhong Zhou, Dewetting in Nanoscale Hydrophobic Plate Collapse and Multi-domain Protein Folding, Gordon Conference on Protein Folding, Ventura, CA, Jan. 12, 2004

  • Ruhong Zhou, Hydrophobicity Spatial Profiling of Proteins, invited talk, Fudan International Bioinformatics Conference, Fudan University, Shanghai, Dec. 18-20, 2003

  • Ruhong Zhou, Computaional Biology and Bioinformatics at IBM Research, Shanghai JiaoTong University, Shanghai, Dec. 17, 2003

  • Ruhong Zhou, Computaional Biology and Bioinformatics at IBM Research, College of Biological Science, Nanjing University, Nanjing, Dec. 16, 2003

  • Ruhong Zhou, Protein Structure Prediction: Hydrophobicity Profiling, Zhejiang University, Hangzhou, Dec. 15, 2003

  • Ruhong Zhou, Small Protein Folding with Molecular Dynamics Simulation, Department of Physics, Michigan Tech University, Houghton, MI, Oct. 30, 2003

  • Ruhong Zhou, Protein Folding and Binding with Molecular Dynamics, Workshop on High Performance Computing in Computational Chemistry and Life Science, IBM Watson Research Center, Yorktown Heights, NY, Sept. 9, 2003

  • Ruhong Zhou, Binding Affinity Prediction for HIV-1RT binding with Nevirapine Analogues: Linear Response Method, Gordon Conference on Computer Aided Drug Design, July 20-25, Tilton, NH, July 20-25, 2003

  • Ruhong Zhou, Protein Folding Mechanism with Replica Exchange Method, The 50th Anniversary of the Monte Carlo Method, Los Alamos National Lab, New Mexico, June 9-11, 2003

  • Ruhong Zhou, B. D. Silverman, Ajay Royyuru, and Prasanna Athma, Hydrophobic Spatial Profiling of Proteins, invited talk, The 7th International Conference on Research in Computational Molecular Biology (RECOMB2003), Berlin, Germany, April 11, 2003

  • Ruhong Zhou, Protein Binding and Folding: Explicit vs. Implicit Solvent, Session Chair, The 225th ACS National Meeting, New Orleans, Mar. 23-27, 2003

  • Ruhong Zhou, Protein Structure Prediction and Protein Folding with Large Scale Simulation, Zhejiang University, Hangzhou, Nov.27, 2002

  • Ruhong Zhou, Computational Biology and Bioinformatics at IBM Research, Chinese National Human Genome Center at Shanghai, Shanghai, Nov. 22, 2002

  • Ruhong Zhou, Computational Biology and Bioinformatics at IBM Research, Institute of Chemistry, Chinese Academy of Science, Beijing, Nov. 21, 2002

  • Ruhong Zhou, Protein Structure Prediction and Protein Folding with Large Scale Simulation, invited talk, Beijing University, Beijing, Nov.26, 2002

  • Ruhong Zhou, Protein folding free energy landscape with highly parallel replica exchange method, invited talk, 2002 Emergent Information Technology Conference (EITC02), Princeton University, Princeton, NJ, Nov. 1, 2002

  • Ruhong Zhou, Effect of binding on conformational dynamics of Calmodulin, 224th ACS National Meeting, Boston, August 21, 2002

  • Ruhong Zhou, Protein Folding with Molecular Dynamics: Novel Algorithms, Department of Computer Science, University of Notre Dame, Notre Dame, July 16, 2002

  • Ruhong Zhou, Free energy landscape of a beta-hairpin folding in water: Explicit solvent vs. Implicit solvent, poster, Gordon Conference on Computational Chemistry, New Hampshire, June 30, 2002

  • Ruhong Zhou, Protein conformational space search with efficient sampling algorithms, Department of Chemistry, Yale University, May 10, 2002

  • Ruhong Zhou, Exploring conformational space of a beta-hairpin folding with replica exchange method and P3ME/RESPA algorithm, 223rd ACS National Meeting, Orlando, FL, April 11, 2002

  • Ruhong Zhou, Linear Interaction Approximation for nevirapine and HEPT analogues binding to HIV-1RT, 2002 BlueGene Workshop, University of Edingburgh, Edingburgh, UK, Mar. 15, 2002

  • Ruhong Zhou, Early results from the Blue Gene science project, invited talk, Biophysics Department, Johns Hopkins University, Baltimore, Mar. 4, 2002

  • Ruhong Zhou, Robert Germain, and B. J. Berne, Exploring the free energy landscape of a beta-hairpin folding in water with replica exchange method, Gordon Conference on Protein Folding Dynamics, Ventura, CA, Jan. 24, 2002

  • Ruhong Zhou and David Silverman, Detecting native structures from a large decoy set using hydrophobic profiling, 2002 Pacific Symposium on Biocomputing (PSB), Hawaii, Jan. 7, 2002

  • Ruhong Zhou, A new linear response method based on continuum solvent model for ligand-receptor binding affinity prediction, 222nd ACS National Meeting, Chicago, Aug. 27, 2001

  • Ruhong Zhou, Protein folding with molecular dynamics: new algorithms, invited talk, School of Medicine, Washington University, St. Louis, Feb. 16, 2001