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Harder Problems Make Better Solutions

Speeding Up Gene Sequencing

IBM Researchers Receive External Awards

Optical Buses: New Vehicles for Clustered Computing

Deep Blue, Part Two

Communication Without Cost

LabNotes


Harder Problems Make Better Solutions

Like builders of medieval castles, cryptographers try to build impenetrable "walls" to keep out intruders. Those walls consist of mathematical problems that would require years of computation on the world's fastest computers to solve. The tougher those problems, the harder it will be to break through the wall and steal data.

Most methods of creating hard problems - such as techniques that rely on factoring huge numbers - do so only most of the time; occasionally, they produce easy problems. Miklos Ajtai of IBM's Almaden Research Center has overcome that barrier, by devising a reliable way of generating an infinite number of extremely difficult problems. The advance could lead to more secure cryptographic systems and thereby improve the security of electronic transactions.

The work stems from the so-called lattice problem. Ajtai's method of generating problems uses an arbitrarily long string of random numbers to define a set of points, called a lattice, in a mathematical space that has as many dimensions as the total of random numbers in the string. The problem to be solved is finding some of the shortest line segments that could connect any two lattice points. As the number of dimensions increases, the problem's complexity grows so fast that it becomes essentially impossible to solve. In fact, nobody has found a general solution that applies to every possible lattice problem since the German mathematician P.G. Lejeune Dirichlet conceived the problem in 1842.

Ajtai's contribution has been to prove that essentially every problem generated by this method is very likely to be as hard to solve as the worst-case problem - the one that takes the longest time to solve. "This is counterintuitive," says Ajtai. "The reasons are given in a long, technically difficult mathematical proof. The proof shows that with a random lattice you can simulate any lattice, even the one for which the problem is hardest."

Since Ajtai's algorithm also creates its own solution to each problem, it could form the basis of authentication methods, such as identification schemes and digital signatures, for communication over electronic networks. "The work is now in the concept stage," says Ajtai. "It offers further security that can be imposed over the existing security system. At this point, it is impossible to say whether the work will supplement existing cryptography or replace it."

"This not only resolves a problem in pure mathematics that has occupied mathematicians for 20 years," adds Ashok Chandra, manager of computer science at Almaden. "It also provides a foundation for improved security, something that is increasingly important for commercial use of the Internet."


Speeding Up Gene Sequencing

Determining the chemical makeup of genes is a key factor in fields that range from medical research and pharmaceutical science to forensics and agriculture. The process, known as gene sequencing, involves identifying the order of bases - the chemical "letters" that make up the genetic code - in the strands of DNA that make up genes.

Sequencers start by using biotechnological techniques to replicate short lengths of DNA from a particular gene. Next, they apply enzymes to cut those pieces into shorter fragments of varying lengths, which they label with biochemical markers. To identify the specific bases in the fragments, scientists next place them in a gel to which they apply an electric field. Because each individual base carries a tiny electric charge, fragments of different lengths travel at different rates through the gel under the influence of the field. They disperse to form separate bands in the gel. Finally, the bands are read, using optical means, to identify the individual bases.

This method, known as gel electrophoresis, has one major drawback: It's very slow. Sequencing a strand containing just 700 bases can take up to six hours. Biotechnologists have devised several ways to speed up the process. Developments include new gels through which the fragments can move faster and the substitution of liquids for gels.

Those improvements face one problem. Because of the higher speeds that they permit, the bands in the gel become narrower. Reading them strains the limits of optics, because it can require resolution of less than half a wavelength of light. A new patent from IBM Research promises to overcome that difficulty and make possible sequencing speeds significantly faster than is feasible today.

The patent, by Kumar Wickramasinghe and Frederic Zenhausern of the Thomas J. Watson Research Center, relies on the scanning interferometric apertureless microscope (SIAM). This optical device appears to circumvent the laws of physics (although in reality it doesn't), because it permits scientists to view images far smaller than the wavelength of light.

U.S. patent number 5,538,898, granted in late July, specifies application of that technology to read the ultranarrow bands of bases in gels or liquids. "The patent covers any use of a near-field microscope to identify the code sequence of any biomolecule using super-resolution limits for any radiation," says Wickramasinghe.

So far, nobody has applied to license the technology. However, Wickramasinghe expects to receive inquiries. "Universities are pushing gene sequencing technology," he explains. "Berkeley, for example, is already at the optical limit." Meanwhile, the Watson team is carrying out its own studies. "We're doing some experiments with the technology to demonstrate that we can improve sequencing speed by a factor of a hundred," Wickramasinghe declares.


BM Researchers Receive External Awards

Retired IBM Fellows John Cocke of the Thomas J. Watson Research Center and Reynold B. Johnson of the Almaden Research Center have received certificates of merit from The Franklin Institute, as part of its celebration of the 50th anniversary of the ENIAC computer. The Institute recognized Cocke for his work on Reduced Instruction Set Computer (RISC) architecture and Johnson for developing the first commercial magnetic disk mass data storage system.

Chandrasekaran Mohan, a computer scientist at Almaden, has received the 1996 Innovations Award from the Association for Computing Machinery Special Interest Group on Management of Data. The awards committee cited him for "truly outstanding" innovations that have "made a major impact in the database field."

Almaden scientist Frances Houle has been named a Fellow of the American Vacuum Society. She receives the honor for her contributions to means of modifying solid surfaces and thin films, particularly in electronic materials.

Watson researcher John T. Richards has received the Distinguished Service Award of the Association for Computing Machinery's Special Interest Group on Programming Language. The award recognizes his five years as chairman of the Object-Oriented Programming Systems Languages and Applications Steering Committee. Academica Sinica, Taiwan's equivalent of the U.S.

National Academy of Sciences, has elected Chang C. Tsuei of Watson to membership, for his lifelong accomplishments in solid-state physics. His major contributions have occurred in high-temperature superconductivity. Two years ago, his team made a significant advance in that area, by designing and implementing a novel tri-crystal tunneling experiment. By revealing half-integer magnetic flux quanta, the experiment demonstrated an unconventional symmetry of superconducting electrons.

Anthony C. Lowe of Watson has been elected president-elect of the Society for Information Displays. He has been the society's treasurer for the past two years.

Nobel laureates J. Georg Bednorz and K. Alex MŸller of the Zurich Research Laboratory have received honorary degrees from the University of Regensburg in Germany. The degrees recognize their discovery of high-temperature superconductivity.


Optical Buses: New Vehicles for Clustered Computing

Companies that can't afford their own parallel computers are opting for the next best thing: linking up several computers to work on the same problem simultaneously. Such "clusters" can consist of mainframes, midrange computers, workstations or even personal computers. "Virtually every IBM system is going to clusters," says John Crow, manager of optical communications at IBM's Thomas J. Watson Research Center.

For companies seeking really cheap supercomputing, the missing link has been an inexpensive means of connecting the elements in a cluster. Researchers from IBM's Thomas J. Watson Research Center, 3M and Lexmark International have now unveiled a prototype high-performance optical bus, officially named the Jitney Parallel Optical Interconnect, designed to fill that need.

The technology includes a transmitter module, a receiver module and a cable, consisting of 20 strands of optical fiber, that can transmit data at a rate of 1 gigabit per second over distances up to 50 meters. The cable comes from 3M, Lexmark worked on the plastic involved in the optical coupling and Crow's team integrated the components to create a compact, low-cost optoelectronic module.

Jitney has two advantages over conventional copper cable technology. It transfers data faster and farther, in each case by a factor of about 10. Just as important, it costs 10 to 100 times less to transfer each gigabit. Research kept the price low by combining highly integrated optoelectronic chips with inexpensive plastic optics and plastic chip packages.

The key advance was adapting the packages for optical use. According to Crow, this demanded extremely tight tolerances, which his team achieved with help from technologists in Bromont, Quebec. In practical terms, Crow summarizes, "With Jitney, you're giving customers the opportunity to make a supercomputer out of their office machines."


Deep Blue, Part Two

Now for the second round. Next May, 15 months after their epic first encounter, world chess champion Garry Kasparov and Deep Blue, the chess-playing parallel computer designed at IBM's Thomas J. Watson Research Center, will once more face off in a man-to-computer struggle for chess supremacy. Last February, Kasparov recovered from a shock defeat in the first of six games to win the match 4-2 (see Research, Number 2, 1996). The next contest, which will take place at the Millenium Hotel in New York City from May 3 to May 10, could be closer. The Watson team has brought in grandmaster Joel Benjamin, a former U.S. chess champion, as an adviser. And it is upgrading Deep Blue to overcome a weakness that emerged in the first match: its strategic predictability. "We are trying to make the system more robust," says C.J. Tan, senior manager of the Deep Blue team. "We have given it more chess knowledge, and have developed tools to make it more flexible and capable of changing strategies between games." The developments will ultimately help Research to refine applications of the underlying technology to such complex computational problems as understanding the molecular dynamics of pharmaceutical companies. But for the moment the team has a single goal. Said Tan: "We intend to win." Ticket sales for the games will be announced early next year.

Communication Without Cost

Can information be sent from one place to another without expending any energy? Maybe, says Rolf Landauer, at the Thomas J. Watson Research Center. In the June 28 issue of Science, he sets out schemes that theoretically reduce to zero the amount of energy needed to transmit information. "I'm saying that in principle you don't have to spend any energy in communications, even over long distances," explains Landauer.

Landauer emphasizes that his work is strictly conceptual, and does not really provide practical methods. He views his paper as "a want ad for further invention," but warns that "there can be no guarantee that these inventions will be coming." The paper extends a series of investigations that were started by Landauer in 1961 and expanded later by him and others. This field explores the fundamental limits imposed by nature on the handling of information in computers, measurement and communication. Originally an obscure field, it now forms the subject of entire conferences.

The central thread of the work, provided by IBM Fellow Charles Bennett in 1973, is "reversibility." Steps that can be carried out without throwing away information - and can be carried out by apparatus that can be turned around to undo the operation - can, in principle, be done without any minimal, unavoidable consumption of energy. Landauer's paper in Science proposes reversible communication methods. The paper reminds us that impractical methods, used only to discuss "in principle" possibilities, can be followed by more realistic versions. That is exactly what happened in the case of Bennett's low energy reversible computation.

Before Landauer's work, analysis of the energy requirements of the communications channel focused on electrical or optical signals, and assumed that the signal energy had to be thrown away at the receiving end. It was also assumed that the signals carrying the information had no favored status; a little noise would push the signal away from its intended value. This led to the conclusion that the signal, whose energy was thrown away, had to overpower the noise. The earlier, very prevalent discussions did not allow for the possibility that information could be carried from one place to another on floppy disks or engraved on stone tablets.

Landauer utilizes systems that are locally stable, like a golf ball lying at the bottom of a depression. If a small disturbance pushes the ball away from the bottom, it is later restored naturally to the bottom. This avoids the need to overpower noise. A ball that has a choice of two adjacent depressions can be used to denote 0 and 1.

The totally novel part of the Science paper is devoted to channels that operate in a quantum mechanical fashion. Theorists had generally assumed that such channels need to use photons, and that the higher the information rate, the larger the amount of photon energy that needs to be spent. Landauer gets around that by envisioning a "ski lift" that transports quantum systems with two states of local stability, denoting 0 and 1. In principle, he asserts, the information that the lifts carry can be loaded and unloaded at each end of the lift. Because no photons are thrown out, no energy is expended. Landauer ships the machinery maintaining the force field, which provides the two states of local stability.


LabNotes

IBM Wins Bid

IBM has been awarded a $93 million contract from the U.S. Department of Energy to build the world's fastest supercomputer.The key to winning the bid was the ability of a research team at the Thomas J. Watson Research Center to optimize the algorithms in a computational fluid dynamics code, which resulted in a greatly improved performance. Watch for full story in the next issue of Research.

Japanese Screen Reader

Japanese Screen Reader/2 was shipped as an Special Needs System product on August 30. The Tokyo Research Laboratory (TRL) led the development of the product's user interface, and Screen Reader/2 uses another product the exploits TRL technology- called ProTalker/2 - to convert text into speech. In addition to reading text on the screen, the new product helps visually handicapped users navigate among OS/2 windows and, through its support of WebExplorer, they can access information on the World Wide Web.

Chinese Error Checking

The China Research Labatory (CRL) has developed a Chinese Error Checking (CEC) system for detecting and correcting errors in a Chinese text. Based on statistical modeling techniques, CEC - with a speed of nearly 1,000 characters per second on a 100 Megahertz PC - has ahigher detection rate and suffers from many fewer false alarms than competing products.

Currently implemented for simplified Chinese used in mainland China, CEC is being extended for traditional Chinese used in Taiwan, Hong Kong, and many countries outside of China, and it is being incorporated into multiple IBM products.




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