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IBM Journal of Research and Development

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Hide details for IBM Journal of Research and Development - Volume 52 (2008)IBM Journal of Research and Development - Volume 52 (2008)
Hide details for Issue 1/2Issue 1/2
Page 2Message from the Vice President, Systems, IBM Research Division by Tilak Agerwala
Page 3Preface by F. Mintzer
Page 7Advances in Rosetta protein structure prediction on massively parallel systems by S. Raman, B. Qian, D. Baker, R.C. Walker
Page 19Massively parallel molecular dynamics simulations of lysozyme unfolding by R. Zhou, M. Eleftheriou, C.-C. Hon, R.S. Germain, A.K. Royyuru, B.J. Berne
Page 31Brain-scale simulation of the neocortex on the IBM Blue Gene/L supercomputer by M. Djurfeldt, M. Lundqvist, C. Johansson, M. Rehn, . Ekeberg, A. Lansner
Page 43Identifying, tabulating, and analyzing contacts between branched neuron morphologies by J. Kozloski, K. Sfyrakis, S. Hill' F. Schrmann, C. Peck, H. Markram
Page 57Ligand discovery on massively parallel systems by S.R. Shave, P. Taylor, M. Walkinshaw, L. Smith, J. Hardy, A. Trew
Page 69EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient by Y.-P. Pang, T.J. Mullins, B.A. Swartz, J.S. McAllister, B.E. Smith, C.J. Archer, R.G. Musselman, A.E. Peters, B.P. Wallenfelt, K.W. Pinnow
Page 83A massively parallel implementation of the common azimuth pre-stack depth migration by H. Calandra, F. Bothorel, P. Vezolle
Page 93Massively parallel electrical-conductivity imaging of hydrocarbons using the IBM Blue Gene/L supercomputer by M. Commer, G.A. Newman, J.J. Carazzone, T.A. Dickens, K.E. Green, L.A. Wahrmund, D.E. Willen, J. Shiu
Page 105Large-scale gyrokinetic particle simulation of microturbulence in magnetically confined fusion plasmas by S. Ethier, W.M. Tang, R. Walkup, L. Oliker
Page 117Scaling climate simulation applications on the IBM Blue Gene/L system by J.M. Dennis, H.M. Tufo
Page 127Terascale turbulence computation using the FLASH3 application framework on the IBM Blue Gene/L system by R.T. Fisher, L.P. Kadanoff, D.Q. Lamb, A. Dubey, T. Plewa, A. Calder, F. Cattaneo, P. Constantin, I. Foster, M.E. Papka, S.I. Abarzhi, S.M. Asida, P.M. Rich, C.C. Glendenin, K. Antypas, D.J. Sheeler, L.B. Reid, B. Gallagher, S.G. Needham
Page 137Architecture of Qbox: A scalable first-principles molecular dynamics code by F. Gygi
Page 145Blue Matter: Scaling of N-body simulations to one atom per node by B.G. Fitch, A. Rayshubskiy, M. Eleftheriou, T.J.C. Ward, M.E. Giampapa, M.C. Pitman, J.W. Pitera, W.C. Swope, R.S. Germain
Page 159Fine-grained parallelization of the Car–Parrinello ab initio molecular dynamics method on the IBM Blue Gene/L supercomputer by E. Bohm, A. Bhatele, L.V. Kal, M.E. Tuckerman, S. Kumar, J.A. Gunnels, G.J. Martyna
Page 177Scalable molecular dynamics with NAMD on the IBM Blue Gene/L system by S. Kumar, C. Huang, G. Zheng, E. Bohm, A. Bhatele, J.C. Phillips, H. Yu, L.V. Kal
Page 189Massively parallel quantum chromodynamics by P. Vranas, M.A. Blumrich, D. Chen, A. Gara, M.E. Giampapa, P. Heidelberger, V. Salapura, J.C. Sexton, R. Soltz, G. Bhanot
Page 199Overview of the IBM Blue Gene/P project by IBM Blue Gene team
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